species:   Rhsol
pid:       PID0548
parent:    Rhi-milR-48
paralog:   
locus:     KB317724.1:182714-182791
matures:   ['CAUGGGCAUGUUGGGAGAUGGUA', 'CCAACUCGAGACAUACCUAUGCG']
srr:       SRR1994871
genome:    /Users/jax/+Genomes/Fungal_genomes/Rhsol.AFRT00000000.1_scaffolds.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994871.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994871.cram KB317724.1:182714-182791

0 out of bounds
4 alignments
4 proper strand
3 stranded perfect matches

                   *****************      ********************                
CCCUAUAGAUACGCCAACUCGAGACAUACCUAUGCGUUCCCUCGUAUCAUGGGCAUGUUGGGAGAUGGUAAGACGGUC
............((((.(((..(((((.((((((((......))...)))))).)))))..))).)))).........
-----------------------------------------------CAUGGGCAUGUUGGGAGAUGGUA-------- l=23 a=0 c
-------------CCAACUCGAGACAUACCUAUGCG------------------------------------------ l=23 a=0 c*
--------------------------------------------UAUCAUGGGCAUGUUGGG---------------- l=18 a=1 ma
---------------------AGACAUACCUAUGCG------------------------------------------ l=15 a=0 ma*

--------------------------------------------UAUCAUGGGCAUGUUGGG---------------- l=18 a=1 (ma)
----------------------------------------------UCAUGGGCAUGUUGGGAGAU------------ l=20 a=1 
----------------------------------------------UCAUGGGCAUGUUGGGAGAUGGUA-------- l=24 a=1 
-------------------------------------------------UGGGCAUGUUGGGAGAUu----------- l=18 a=1 

mb-01011
ax-1011001
ku-01
ss-100011111100
fn-011
